References

[DMP+24]

Alexander Dietrich, Lorenzo Merotto, Konstantin Pelz, Bernhard Eder, Constantin Zackl, Katharina Reinisch, Frank Edenhofer, and others. Benchmarking second-generation methods for cell-type deconvolution of transcriptomic data. bioRxiv, pages 2024–06, 2024. URL: https://www.biorxiv.org/content/10.1101/2024.06.01.000000.

[FMP+19]

Francesca Finotello, Gregor Mayer, Christian Plattner, Cornelia Laschober, Dietmar Rieder, Peter Hackl, Lukas Krogsdam, Michael L. T. Helmberg, and Zlatko Trajanoski. Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of rna-seq data. Genome Medicine, 11(1):34, May 2019. URL: https://doi.org/10.1186/s13073-019-0638-6, doi:10.1186/s13073-019-0638-6.

[HYH+22]

Kasim H. Hajdarovic, Doudou Yu, Lexi A. Hassell, and others. Single-cell analysis of the aging female mouse hypothalamus. Nature Aging, 2:662–678, 2022. URL: https://doi.org/10.1038/s43587-022-00246-4, doi:10.1038/s43587-022-00246-4.

[HHAN+21]

Yuhan Hao, Stephanie Hao, Emma Andersen-Nissen, William M. Mauck III, Shiwei Zheng, Andrew Butler, Maddie J. Lee, Aaron J. Wilk, Charlotte Darby, Michael Zager, Peter Hoffman, Erin Stoeckius, Brian Papalexi, Elham M. Mimitou, James Jain, Avi Srivastava, Tim Stuart, Lior Rubinstein, Kamil D. Fredrickson, Daniel J. Trzupek, and Andrew J. Satija. Integrated analysis of multimodal single-cell data. Cell, 184(13):3573–3587.e29, 2021. URL: https://doi.org/10.1016/j.cell.2021.04.048, doi:10.1016/j.cell.2021.04.048.

[KSD+22]

Vitalii Kleshchevnikov, Artem Shmatko, Emma Dann, Alexander Aivazidis, Hannah W. King, Tong Li, Rasa Elmentaite, Artem Lomakin, Veronika Kedlian, Adam Gayoso, Nir Piterman, Michael P. Menden, Oliver Stegle, Kerstin B. Meyer, Omer Ali Bayraktar, and Sarah A. Teichmann. Cell2location maps fine-grained cell types in spatial transcriptomics. Nature Biotechnology, 40:661–671, 2022. URL: https://doi.org/10.1038/s41587-021-01139-4, doi:10.1038/s41587-021-01139-4.