Rectangle#
Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation methods through its efficiency in signature creation and its handling of challenges within the deconvolution process. To establish a precise deconvolution method, we employ a hierarchical analysis approach, incorporate mRNA bias correction, and provide an estimation of unknown cellular content.
Getting started#
Please refer to the documentation. In particular, the
Installation#
You need to have Python 3.10 or newer installed on your system. If you don’t have Python installed, we recommend installing Mambaforge.
How to install Rectangle:
Install the latest release of Rectangle from PyPI <https://pypi.org/project/rectanglepy/>:
pip install rectanglepy
Release notes#
See the changelog.
Contact#
If you found a bug, please use the issue tracker.
Citation#
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